PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_023477-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 299aa    MW: 32232.7 Da    PI: 6.1335
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_023477-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016132154123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C+++F++   L  H  +H
  NNU_023477-RA 132 YECKTCNRCFPSFQALGGHRASH 154
                    99**********99999998887 PP

2zf-C2H213.70.00019211233123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++Cg  Fs+   L  H+r+H
  NNU_023477-RA 211 HECSICGSEFSSGQALGGHMRRH 233
                    78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.94E-9131154No hitNo description
PfamPF139122.0E-11131156IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.367132159IPR007087Zinc finger, C2H2
SMARTSM003550.14132154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
SuperFamilySSF576673.94E-9206233No hitNo description
PfamPF139125.4E-12210235IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.097211238IPR007087Zinc finger, C2H2
SMARTSM003550.02211233IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEVAEEVMGS NEHTHIVKGK RTKRQRPPSP FAAVAMTTSS SSGGGGEEEE EESGGSGGDE  60
VGFPSPTTSV EFAAESTEEE EDMANCLILL AQGHGRDSPR RIEEGGAMER ASSRRFAEAA  120
TTTTAKAGFY VYECKTCNRC FPSFQALGGH RASHKKPKAM AEDKKSLMAL SPEEDEPQFT  180
HNSIPSSLLP LQIGNRVVYN STTTTTKSRV HECSICGSEF SSGQALGGHM RRHRSAPTTT  240
ISPTPDSPDA AKKPRTVLSL DLNLPAPTED DHREPKFPFA SKQQPSLIFS ASALVDCHY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243202.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA5ARW44e-93A5ARW4_VITVI; Putative uncharacterized protein
STRINGVIT_08s0007g04770.t011e-92(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-53C2H2 family protein